AGB – Ancestral Genome Browser

AGB

:: DESCRIPTION

AGB is a website which provides the ancestral organisms genomic information. It builds on genetic resources of existent living things.

::DEVELOPER

Bioinformatics Laboratory, Konkuk University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Lee D, Lee J, Hong WY, Jang E, and Kim J,
AGB (Ancestral Genome Browser): A Web Interface for Browsing Reconstructed Ancestral Genomes,
Journal of KIISE, 42(12):1584-1589, 2015

InferCars 20060616 – Reconstruct Contiguous Regions of an Ancestral Genome

InferCars 20060616

:: DESCRIPTION

InferCars is a software of reconstructing contiguous regions of an ancestral genome.

::DEVELOPER

Ma Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GCC

:: DOWNLOAD

 InferCars

:: MORE INFORMATION

Citation

Genome Res. 2006 Dec;16(12):1557-65. Epub 2006 Sep 18.
Reconstructing contiguous regions of an ancestral genome.
Ma J, Zhang L, Suh BB, Raney BJ, Burhans RC, Kent WJ, Blanchette M, Haussler D, Miller W.

GapAdj – Ancestral Genome Inference program

GapAdj

:: DESCRIPTION

GapAdj (Gapped-Adjacencies) is a generalization of DirectAdj accounting for α-adjacencies for increasing values of α

::DEVELOPER

NADIA EL-MABROUK

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GapAdj

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012;13 Suppl 19:S4. doi: 10.1186/1471-2105-13-S19-S4. Epub 2012 Dec 19.
A flexible ancestral genome reconstruction method based on gapped adjacencies.
Gagnon Y, Blanchette M, El-Mabrouk N.

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