ARACNE 2

:: DESCRIPTION

ARACNE (Algorithm for the Reconstruction of Accurate Cellular Networks), a novel algorithm, using microarray expression profiles, specifically designed to scale up to the complexity of regulatory networks in mammalian cells, yet general enough to address a wider range of network deconvolution problems. This method uses an information theoretic approach to eliminate the vast majority of indirect interactions typically inferred by pairwise analysis.

::DEVELOPER

the Califano lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / Mac OsX
• Java
• Cytoscape

:: DOWNLOAD

 ARACNE

:: MORE INFORMATION

Citation:

dam A Margolin et al.
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Contex
BMC Bioinformatics. 2006; 7(Suppl 1): S7.