T-REKS
:: DESCRIPTION
T-REKS (Tandem Repeats Exploration based on K-means in Sequences) is an algorithm for de novo detection and alignment of repeats in sequences based on K-means algorithm. Minimal length of repeat arrays is 9 for true homorepeats and 14 for other repeats with potential biological meaning.
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::DEVELOPER
BiSMM – Structural Bioinformatics and Molecular Modeling
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Linux / Mac OsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2009 Oct 15;25(20):2632-8. Epub 2009 Aug 11.
T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.
Jorda J, Kajava AV.