RFA 0.1

:: DESCRIPTION

RFA is a method for aligning barcoded reads generated by a read cloud protocol such as 10X or Moleculo. Reads of the same barcode are aligned jointly to the reference genome. As a result, many of the repeats in the genome can be mapped.

::DEVELOPER

Serafim’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

RFA

:: MORE INFORMATION

Citation

Bishara A, Liu Y, Weng Z, Kashef-Haghighi D, Newburger DE, West R, Sidow A, Batzoglou S.
Read clouds uncover variation in complex regions of the human genome.
Genome Res. 2015 Oct;25(10):1570-80. doi: 10.1101/gr.191189.115. Epub 2015 Aug 18. PMID: 26286554; PMCID: PMC4579342.