PANDA v2 / PyPanda / PandaR 1.18.0
:: DESCRIPTION
PANDA is a message-passing model using multiple sources of information to predict regulatory relationships, and used it to integrate protein-protein interaction, gene expression, and sequence motif data to reconstruct genome-wide, condition-specific regulatory networks in yeast.
PandaR is an alternate implementation of PANDA in R
PyPanda is a python implementation of PANDA
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / Linux /MacOsX
- Python / C Compiler / R
:: DOWNLOAD
:: MORE INFORMATION
Citation:
PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013.
Passing messages between biological networks to refine predicted interactions.
Glass K1, Huttenhower C, Quackenbush J, Yuan GC.
PyPanda: a Python package for gene regulatory network reconstruction.
van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML.
Bioinformatics. 2016 Jul 10. pii: btw422.