OSS
:: DESCRIPTION
OSS is a dynamic-programming algorithm that finds the optimal seeds of a read, which renders the minimum total seed frequency.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / MacOs
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hongyi Xin, Sunny Nahar, Richard Zhu, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu (2015).
Optimal seed solver: optimizing seed selection in read mapping.
Bioinformatics 32(11):1632-1642.