miRDeep-P 1.3 / miRDP2 1.1.5
miRDeep-P (miRDP) is a tool which can be used to detecting miRNAs in plants from deeply sequenced small RNA libraries. It was developed by modifying miRDeep, which is based on a probabilistic model of miRNA biogenesis in animals, with a plant-specific scoring system and filtering criteria.
miRDP2 is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm.
- Windows / Linux / MacOsX
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Kuang Z, Wang Y, Li L, Yang X.
miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants.
Bioinformatics. 2019 Jul 15;35(14):2521-2522. doi: 10.1093/bioinformatics/bty972. PMID: 30521000.
Bioinformatics. 2011 Sep 15;27(18):2614-5. doi: 10.1093/bioinformatics/btr430. Epub 2011 Jul 19.
miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.
Yang X1, Li L.