COCAS 2.4

:: DESCRIPTION

CoCAS is a standalone Chromatin immunoprecipitation microarray (ChIP-on-chip) analysis application. It has been designed to be used primarily on Agilent microarrays scanned with an Agilent scanner.

CoCAS can readily be used on the latest generation of Agilent high-density arrays. Unlike other tools available, Cocas allows dye-swap, replicate correlation and connects easily with other software (genome browsers and peak detection). The peak detection methods implemented in CoCAS can be used for any set of data including ChIP-Seq data.

::DEVELOPER

Lab. Pierre FERRIER

:: SCREENSHOTS

:: REQUIREMENTS

• Windows / Linux / MacOsX
• Java
• R Package

:: DOWNLOAD

COCAS for Win ; for Mac ; for Linux

:: MORE INFORMATION

Citation:

Benoukraf T, Cauchy P, Fenouil R, Jeanniard A, Koch F, Jaeger S, Thieffry D, Imbert J, Andrau JC, Spicuglia S, Ferrier P (2009). CoCAS: A ChIP-on-chip Analysis Suite. Bioinformatics 25: 954-5.