Glo-DB is designed to perform position-based queries of genomic sequence annotations (features). It contains a query language that affords many different types of position searches via command line and graphical user interfaces, and incorporates various visualization tools.
GCAligner is a software designed to perform a preliminary alignment of chemical data obtained by gas chromatography. It was created to facilitate the comparison of multiple samples. The alignment algorithm is based on the comparison between each retention time, the following retention time in the same sample and its closest retention times in other samples. GCAligner is a java executable software running on any operating system. The input data file and the single output file containing the align data set are text files with tab delimited pieces of information.
See the software manual for further details.
MutaGeneSys (Mutation Genome System) uses genome-wide genotype data to estimate individual disease susceptibility. Our system integrates three data sources: the International HapMap project(hapmap.org), whole-genome marker correlation data (description) and the Online Mendelian Inheritance in Man database (OMIM). MutaGeneSys accepts SNP data of individuals as query input and delivers disease susceptibility hypotheses even if the original set of typed SNPs is incomplete. Our system produces population, genotyping technology, and confidence-specific predictions in interactive time.
GuiLiner is a generic, extensible and flexible front-end designed to “host” a wide variety of data analysis or simulation programs.Scientific application developers who produce a correctly formatted XML file describing their program’s options and some of its documentation can immediately use GuiLiner to produce a carefully implemented GUI for their analysis or simulation programs.
LACS ( linear analysis of chemical shifts) is a validation tool for protein backbone NMR chemical shift data. Based on the observation that secondary chemical shift (difference between the chemical shift of an amino acid and its random coil chemical shift) well indicate the local backbone geometry, LACS correlates the secondary chemical shifts of a nucleus to that of Ca-Cb of itself (referencing independent), thus avoiding any geometry or structure assumptions, to estimate referencing offsets and identify possible miss-assignments.
GeoStaS divides a biomolecule (proteins, nucleic acids and their complexes) into dynamic domains based on its different conformations, obtained from experiments or simulations.
ROMA (Representation and quantification Of Module Activities) is a software package written in Java for the quantification and representation of biological module activity using gene expression or other omics data.