BioProspector 2004

:: DESCRIPTION

BioProspector discovers conserved transcription factor binding sites among upstream sequences from co-regulated genes. BioProspector uses a Gibbs sampling approach to align and score DNA segments. It can find short (8bp), interrupted, weakly conserved (50%) and not very abundant DNA motifs from microarray data.

BioProspector Online Version

::DEVELOPER

Xiaole Shirley Liu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• windows with Cygwin / Linux / Mac OsX
• C Complier

:: DOWNLOAD

  BioProspector

:: MORE INFORMATION

Citation:

Liu X, Brutlag DL, Liu JS.
BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
Pac Symp Biocomput. 2001;:127-38.