trieFinder
:: DESCRIPTION
The trieFinder program is designed to rapidly map Digital Gene Expression (DGE) tags of various lengths to RefSeq, UniGene, and/or genomic sequences. It annotates the tags with information from the sequence files, providing output in a format that is amenable to both transcript quantification and the detection of novel transcripts.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- C++ compiler
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2014 Oct 13;15:329. doi: 10.1186/1471-2105-15-329.
trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.
Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM