Tag: Promoter

ProStar – Structural Parameters for Promoter Prediction

ProStar

:: DESCRIPTION

ProStar (Promoter Structural Parameters) is a software for the prediction of promoter regions based on atomic molecular dynamics simulations of small oligonucleotides has been developed. The software works independently of gene structure conservation and orthology and of the presence of detectable sequence features. Results obtained with our method confirm the existence of a hidden physical code that modulates genome expression.

::DEVELOPER

Molecular Recognition & Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  No, Only Web Service

:: MORE INFORMATION

Citation

J Ramon Goni, Alberto Perez, David Torrents and Modesto Orozco.
Determining promoter location based on DNA structure first-principles calculations
Genome Biology 2007, 8:R263

Element 2.0 – Identify Over-represented Motifs across groups of Promoters

Element 2.0

:: DESCRIPTION

Element is a web-based tool that identifies over-represented motifs across groups of promoters. Numerous plant genomes are already available online to be run against. If you don’t see your genome of interest, feel free to suggest that we add it.

::DEVELOPER

Mockler Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation:

The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis.
Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J.
Cold Spring Harb Symp Quant Biol. 2007;72:353-63. doi: 10.1101/sqb.2007.72.006.

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