QSCORE is a quality scoring program that compares two multiple sequence alignments: an alignment to be evaluated (the “test” alignment) and a second alignment that is believed to be correct (the “reference” alignment).
Base-By-Base is a whole genome pairwise and multiple alignment editor. The program highlights differences between pairs of alignments and allows the user to easily navigate large alignments of similar sequences. Although Base-By-Base was intended as an editor and viewer for alignments of highly similar sequences, it is also provides many of the functions of other generic alignment editors.
::DEVELOPER
Dr. Chris Upton, University of Victoria, Biochemistry and Microbiology