QSCORE – Multiple Alignment Scoring Software

QSCORE

:: DESCRIPTION

QSCORE is a quality scoring program that compares two multiple sequence alignments: an alignment to be evaluated (the “test” alignment) and a second alignment that is believed to be correct (the “reference” alignment).

::DEVELOPER

Robert Edgar

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

QSCORE

:: MORE INFORMATION

N/A

 

Base-By-Base – Genome Pairwise & Multiple Alignment Editor

Base-By-Base

:: DESCRIPTION

Base-By-Base is a whole genome pairwise and multiple alignment editor. The program highlights differences between pairs of alignments and allows the user to easily navigate large alignments of similar sequences. Although Base-By-Base was intended as an editor and viewer for alignments of highly similar sequences, it is also provides many of the functions of other generic alignment editors.

::DEVELOPER

Dr. Chris Upton, University of Victoria, Biochemistry and Microbiology

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

Base-By-Base

:: MORE INFORMATION

Citation:

Brodie, R., A.J. Smith, R.L. Roper, V. Tcherepanov, and C. Upton. 2004.
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments, BMC Bioinformatics, 5, 96.

 

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