:: DESCRIPTION
TwoPaCo is a simple and scalable low memory algorithm for the direct construction of the compacted de Bruijn graph from a set of complete genomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics, 33 (24), 4024-4032 2017 Dec 15
TwoPaCo: An Efficient Algorithm to Build the Compacted De Bruijn Graph From Many Complete Genomes
Ilia Minkin , Son Pham , Paul Medvedev
:: DESCRIPTION
PhyloSift is a suite of software tools to conduct phylogenetic analysis of genomes and metagenomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PhyloSift: phylogenetic analysis of genomes and metagenomes.
Darling AE, Jospin G, Lowe E, Matsen FA 4th, Bik HM, Eisen JA.
PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243.
:: DESCRIPTION
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Oct 17. pii: btu687. [Epub ahead of print]
E-MEM: efficient computation of maximal exact matches for very large genomes.
Khiste N, Ilie L.
:: DESCRIPTION
Contrail is a Hadoop based genome assembler for assembling large genomes in the clouds
::DEVELOPER
Schatz Lab, Cold Spring Harbor Laboratory
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
