:: DESCRIPTION
ssNPA is a new approach for subtyping samples based on deregulation of their gene networks.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics 2019 Dec 24[Online ahead of print]
Causal Network Perturbations for Instance-Specific Analysis of Single Cell and Disease Samples
Kristina L Buschur , Maria Chikina , Panayiotis V Benos
:: DESCRIPTION
GeneNet is a package for analyzing gene expression (time series) data with focus on the inference of gene networks.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Syst Biol. 2007 Aug 6;1:37.
From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data.
Opgen-Rhein R, Strimmer K.
:: DESCRIPTION
BANFF (Bayesian Network Feature Finder) is an R package for gene network feature selection.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bayesian network feature finder (BANFF): an R package for gene network feature selection.
Lan Z, Zhao Y, Kang J, Yu T.
Bioinformatics. 2016 Dec 1;32(23):3685-3687.
:: DESCRIPTION
JiffyNet specifically designed to instantly construct genome-scale protein networks based on associalogs (functional associations transferred from a template network by orthology) for a query species with only protein sequences provided.
::DEVELOPER
Network Biomedicine Laboratory at Yonsei University, Korea
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Eiru Kim, Hanhae Kim, Insuk Lee.
JiffyNet: a web-based instant protein network modeler for newly sequenced species,
Nucl. Acids Res. (1 July 2013) 41 (W1): W192-W197
:: DESCRIPTION
Netsim is a Gene Network simulator implemented for the R programming language in C.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Ann N Y Acad Sci. 2009 Mar;1158:125-42. doi: 10.1111/j.1749-6632.2008.03756.x.
A gene network simulator to assess reverse engineering algorithms.
Di Camillo B, Toffolo G, Cobelli C.
