:: DESCRIPTION
FaStore is a high-performance short FASTQ sequencing reads compressor.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics, 34 (16), 2748-2756 2018 Aug 15
FaStore: A Space-Saving Solution for Raw Sequencing Data
Lukasz Roguski, Idoia Ochoa, Mikel Hernaez , Sebastian Deorowicz
:: DESCRIPTION
FASTools is a collection to command-line tools to manipulate files containing DNA sequences in FASTA and FASTQ format.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
YALFF is a tool for quality scores compression by smoothing leading to improved compressibility of FASTQ files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics, 20 (Suppl 9), 302 2019 Nov 22
Better Quality Score Compression Through Sequence-Based Quality Smoothing
Yoshihiro Shibuya, Matteo Comin
:: DESCRIPTION
Karma ( K-tuple Alignment with Rapid Matching Algorithm) is an index based high speed aligner for mapping shotgun sequencer FASTQ reads to a reference genome. Karma assembles FASTQ files from Solexa into a set of mapped reads using a genome reference. It does this by first creating a index of the genome reference, then uses portions of the read to index into the reference to find possible matches.
::DEVELOPER
Paul Anderson @ the Center for Statistical Genetics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Quip compresses next-generation sequencing data in the FASTQ and SAM/BAM formats with extreme prejudice.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2012 Dec;40(22):e171. doi: 10.1093/nar/gks754. Epub 2012 Aug 16.
Compression of next-generation sequencing reads aided by highly efficient de novo assembly.
Jones DC, Ruzzo WL, Peng X, Katze MG.
:: DESCRIPTION
ea-utils is a command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Erik Aronesty (2013).
“Comparison of Sequencing Utility Programs“,
The Open Bioinformatics Journal
:: DESCRIPTION
BWA-DoAll, a package for the batch alignment and processing of FASTQ libraries.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
