Istvan – Normalisation of Expression Data

Istvan

:: DESCRIPTION

Istvan is a collection of modules implementing various methods for inferring an invariant set, i.e. a set of genes with no or little difference in actual expression levels, from a set of pairs of microarray measured expression levels, and for inferring normalising functions based on a set of pairwise data, possibly an invariant set determined by one of the implemented methods.

::DEVELOPER

Rune Lyngsø

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX\
C Compiler

:: DOWNLOAD

Istvan

:: MORE INFORMATION

Gene-warp 3.2 – Generate Alignment Matrices, Explore Temporal Asynchrony in Expression of Orthologs

Gene-warp 3.2

:: DESCRIPTION

Gene-warp is a tool to select ortholog pairs with best alignments and to explore alignment paths (not expression profiles!) shared by many genes. The program takes as an input two related datasets, containing profiles of orthologous genes.

::DEVELOPER

Dmitri Papatsenko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows

:: DOWNLOAD

Gene-warp

:: MORE INFORMATION

Citation

Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.

PARE – Compare Protein Abundance and mRNA Expression data

PARE

:: DESCRIPTION

PARE (Protein Abundance and mRNA Expression) is a tool for comparing protein abundance and mRNA expression data. In addition to globally comparing the quantities of protein and mRNA, PARE allows users to select subsets of proteins for focused study (based on functional categories and complexes). Furthermore, it highlights correlation outliers, which are potentially worth further examination.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

PARE

:: MORE INFORMATION

Citation:

EZ Yu, AE Burba, M Gerstein (2007)
PARE: a tool for comparing protein abundance and mRNA expression data.
BMC Bioinformatics 8: 309.