WEAV wants to be general sequence assembler including genomic sequence assembler, whole transcriptome assembler, metagenomic sequence assembler, and so on.
Multi-Dendrix is an algorithm for the simultaneous discovery of multiple driver pathways using only somatic mutation data from a cohort of samples. Multi-Dendrix uses an integer linear program to identify pathway sets such that each pathway contains genes with approximately mutually exclusive mutations and high coverage of the sample set.
UniNovo is a universal de novo peptide sequencing tool that works well for various types of spectra and spectral pairs (e.g., CID, ETD, HCD, CID/ETD, etc). The accuracy of de novo reconstructions generated by UniNovo is better than or comparable to PepNovo+ or PEAKS. Moreover, UniNovo also estimates the error rate of the reported reconstruction.
NPLB is an efficient, organism-independent method for characterizing such diverse architectures directly from experimentally identified genome-wide TSSs, without relying on known promoter elements.