ASprofile – Extracting, Quantifying and Comparing Alternative Splicing (AS) Events from RNA-seq data

ASprofile

:: DESCRIPTION

ASprofile is a suite of programs for extracting, quantifying and comparing alternative splicing (AS) events from RNA-seq data.

::DEVELOPER

Center for Computational Biology , Johns Hopkins University School of Medicine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  ASprofile

:: MORE INFORMATION

MACO 20060322 – Gapped-alignment Scoring tool for Comparing Transcription Factor Binding Sites

MACO 20060322

:: DESCRIPTION

MACO is a Position Frequency Matrix(PFM) comparing application that implements a gap-allowed alignment algorithm. You may compare your PFM with those collected in our dataset.

::DEVELOPER

Bioinformatics Group in Nanjing University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl
  • Apache

:: DOWNLOAD

 MACO

:: MORE INFORMATION

Citation

MACO: a gapped-alignment scoring tool for comparing transcription factor binding sites.
Su G, Mao B, Wang J.
In Silico Biol. 2006;6(4):307-10.

Exit mobile version