:: DESCRIPTION
GPCRSclass is a dipeptide composition based method for predicting Amine Type of G-protein-coupled receptors. In this method type amine is predicted from dipeptide composition of proteins using SVM.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bhasin M, Raghava GPS.
GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors.
Nucleic Acids Res.(2005). 33(Web Server issue):W143-7
:: DESCRIPTION
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different classes. The structural information based graph properties were used for the development of prediction model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Panwar, B; Arora, A. and Raghava GP (2014)
Prediction and classification of ncRNAs using structural information
BMC Genomics 2014, 15:127
:: DESCRIPTION
EGFRpred is a web service for the predicting and designing of inhibitors against EGFR (a cell surface receptor whose overexpression is known to cause cancer).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest.
Singh H, Singh S, Singla D, Agarwal SM, Raghava GP.
Biol Direct. 2015 Mar 25;10(1):10.
:: DESCRIPTION
GECES is a web-server for Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1
::DEVELOPER
The Li’s Group of Theoretical Biophysics and Bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gene. 2016 Oct 30;592(1):227-234. doi: 10.1016/j.gene.2016.07.059. .
Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1.
Su WX, Li QZ, Zhang LQ, Fan GL, Wu CY, Yan ZH, Zuo YC
d
:: DESCRIPTION
Clean tree is a tool intended to help interpret phylogenetic SNP genotypes obtained from NGS-data, furthermore it uses a quality control system to ensure the accuracy of the obtained results.
::DEVELOPER
Dept Genetic Identification ErasmusMC Rotterdam
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Ralf, A., van Oven, M., Zhong, K., Kayser, M.
Simultaneous analysis of hundreds of Y-chromosomal SNPs for high-resolution paternal lineage classification using targeted semiconductor sequencing.
Hum Mutat. 2015 36: 151-9. PubMed: 25338970
Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing.
Ralf A, Oven M, Montiel González D, de Knijff P, van der Beek K, Wootton S, Lagacé R, Kayser M.
Forensic Science International: Genetics , 2019
:: DESCRIPTION
Kraken is a very fast system for taxonomic classification of short or long DNA sequences from a microbiome or metagenomic sample.
::DEVELOPER
The Center for Computational Biology at Johns Hopkins University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2014 Mar 3;15(3):R46. doi: 10.1186/gb-2014-15-3-r46.
Kraken: ultrafast metagenomic sequence classification using exact alignments.
Wood DE, Salzberg SL.
:: DESCRIPTION
CoMeta is a tool used to assigns a query read (DNA fragment) from metagenomic sample into one of the groups (the most common the taxon).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2015 Apr 17;10(4):e0121453. doi: 10.1371/journal.pone.0121453. eCollection 2015.
CoMeta: classification of metagenomes using k-mers.
Kawulok J, Deorowicz S
:: DESCRIPTION
Cartaj automatically predicts the topological family of any RNA three-way junction, given only the information from the secondary structure: the sequence and the canonical Watson–Crick pairings.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Comput Biol Chem. 2012 Apr;37:1-5. doi: 10.1016/j.compbiolchem.2011.11.001. Epub 2012 Jan 11.
Automated prediction of three-way junction topological families in RNA secondary structures.
Lamiable A1, Barth D, Denise A, Quessette F, Vial S, Westhof E.
:: DESCRIPTION
AutoFACT is a program that analyses nucleotide and protein sequence data, deriving informative functional descriptions by combinining multiple BLAST reports from a selection of databases. AutoFACT assigns functional information, enzyme clasees, and Gene Ontology terms where possible.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
AutoFACT: an automatic functional annotation and classification tool.
Koski LB, Gray MW, Lang BF, Burger G.
BMC Bioinformatics. 2005 Jun 16;6:151.
:: DESCRIPTION
BLOG (Barcoding with LOGic formulas) is a application devoted to the automatic classification of animal species through the analysis of a small portion of mitochondrial DNA, DNA Barcode.
::DEVELOPER
DMB (Data Mining Big) Team
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Learning to classify species with barcodes
Paola Bertolazzi, Giovanni Felici and Emanuel Weitschek
BMC Bioinformatics 2009, 10(Suppl 14):S7
