Tag: 3D

UBViz 0.9R04- Explore Metabolic Pathways in 3D

UBViz 0.9R04

:: DESCRIPTION

UBViz is a software tool designed to make biochemical pathways easier to understand for biologists. Users can visualize and interact with a biochemical pathway from KEGG’s website in 3-D space, and browse all related web pages within one window.

With UBViz’ built-in network functionalities, pathway data are obtained directly from KEGG’s website and automatically processed. As a result, users are guaranteed to view the newest version of the biochemical pathways. UBViz uses the popular XML format as its input, with very little modification UBViz can be easily adapted to view any database which stores pathway information in XML.

::DEVELOPER

Complex Computation Laboratory ,Iowa State University

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows /Mac OsX

:: DOWNLOAD

Registration First ; UBViz

:: MORE INFORMATION

Citation

UBViz: a software tool for exploring metabolic pathways in 3-D space
Song Li and Hui-Hsien Chou
BioTechniques Vol. 38, No. 4: pp 540-542 (Apr 2005)

Chemis3D 2.89b – Java 3D Molecular Viewer Applet

Chemis3D 2.89b

:: DESCRIPTION

Chemis3D is a Java Applet which renders virtual 3D molecular models within a Web document. It is specially designed for open interactive molecular visualization on the Internet or via an intranet. Molecular structures can be manipulated in real-time and rendered in various styles and appearances.

Chemis3D is a small applet running well on any Java-enabled browser and requiring no specialized plug-in nor professional applications.

Features

  • Real-time manipulation and fast 3D rendering.
  • Wide variety of molecular representations including special styles and color coding schemes for proteins and nucleic acids .
  • Enhanced interface using popumenu and key shortcuts .
  • Multi-models display and molecular animation capabilities.
  • Measuring and analysing tools.
  • Support of the most popular molecular data formats :Brookhaven Protein DataBank (*.pdb).MSC XMol files (*.xyz).MDL molfiles (*.mol).

::DEVELOPER

Didier COLLOMB

:: SCREENSHOTS

:: REQUIREMENTS

  • Java-enabled browser

:: DOWNLOAD

Chemis3D 2.89b

:: MORE INFORMATION

Chemis3D MAY BE FREELY USED FOR PERSONNAL, ACADEMIC AND NON-COMMERCIAL PURPOSES, IN AGREEMENT WITH THE FOLLOWING RESTRICTIONS.

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