HotspotFisher
:: DESCRIPTION
HotspotFisher is a package for detecting recombination hotspots from population polymorphism data. HotspotFisher uses a multi-hotspot model and the truncated weighted pairwise log-likelihood (TWPLL), so it can detect multiple hotspots in a region. HotspotFisher can be used to both phased/haplotype and unphased/genotype data directly, with arbitrary levels of missing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / WIndows
:: DOWNLOAD
:: MORE INFORMATION
Citation
Jun Li, Michael Q Zhang, Xuegong Zhang (2006)
A New Method for Detecting Human Recombination Hotspots and Its Applications to the HapMap ENCODE Data.
The American Journal of Human Genetics 79:628-639.