Yanagi – Segment-based RNA-seq analysis

Yanagi

:: DESCRIPTION

Yanagi is a tool which segments a transcriptome into disjoint regions to create a segments library from a complete transcriptome annotation that preserves all of its consecutive regions of a given length L while distinguishing annotated alternative splicing events in the transcriptome.

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::DEVELOPER

HCBravo Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R
  • Python

:: DOWNLOAD

Yanagi

:: MORE INFORMATION

Citation

Gunady MK, Mount SM, Corrada Bravo H.
Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis.
BMC Bioinformatics. 2019 Aug 13;20(1):421. doi: 10.1186/s12859-019-2947-6. PMID: 31409274; PMCID: PMC6693274.

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