Xpresso – Predicting Gene Expression levels from DNA Sequences

Xpresso

:: DESCRIPTION

Xpresso is a software suite whose goal is to predict gene expression levels and transcriptional activity from genomic sequences. It is trained using convolutional neural networks. Pre-trained models are available for the human, mouse, and several cell types for these species.

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::DEVELOPER

Shendure Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows
  • Python
  • R

:: DOWNLOAD

Xpresso

:: MORE INFORMATION

Citation

Agarwal V, Shendure J.
Predicting mRNA Abundance Directly from Genomic Sequence Using Deep Convolutional Neural Networks.
Cell Rep. 2020 May 19;31(7):107663. doi: 10.1016/j.celrep.2020.107663. PMID: 32433972.

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