ViSNE / CYT – Map High-dimensional Cytometry data onto Two Dimensions

ViSNE / CYT

:: DESCRIPTION

viSNE is a tool that allows one to map high-dimensional cytometry data onto two dimensions, yet conserve the high-dimensional structure of the data. viSNE plots individual cells in a visual similar to a scatter plot, while using all pairwise distances in high dimension to determine each cell’s location in the plot.

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CYT is an interactive visualization tool designed for the analysis of viSNE maps and the high-dimensional mass or flow cytometry data from which these maps were projected.

::DEVELOPER

Dana Pe’er Lab

:: SCREENSHOTS

CYT

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Matlab
  • Java

:: DOWNLOAD

 ViSNE / CYT

:: MORE INFORMATION

Citation

Nat Biotechnol. 2013 Jun;31(6):545-52. doi: 10.1038/nbt.2594.
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
Amir el-AD, Davis KL, Tadmor MD, Simonds EF, Levine JH, Bendall SC, Shenfeld DK, Krishnaswamy S, Nolan GP, Pe’er D.