TSRchitect 1.20.0 – Promoter Identification from large-scale TSS Profiling data

TSRchitect 1.20.0

:: DESCRIPTION

TSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end (e.g. CAGE) as well as paired-end (RAMPAGE, PEAT, STRIPE-seq).

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::DEVELOPER

The Brendel Group @ Indiana University

:: REQUIREMENTS

  • Linux
  • R
  • Bioconductor

:: DOWNLOAD

TSRchitect

:: MORE INFORMATION

Citation

Raborn RT, Brendel VP.
Using RAMPAGE to Identify and Annotate Promoters in Insect Genomes.
Methods Mol Biol. 2019;1858:99-116. doi: 10.1007/978-1-4939-8775-7_9. PMID: 30414114.

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