treeio is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
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treeio: an R package for phylogenetic tree input and output with richly annotated and associated data.
Wang LG, Lam TT, Xu S, Dai Z, Zhou L, Feng T, Guo P, Dunn CW, Jones BR, Bradley T, Zhu H, Guan Y, Jiang Y, Yu G.
Mol Biol Evol. 2019 Oct 21. pii: msz240. doi: 10.1093/molbev/msz240