GO Term Finder 0.86

:: DESCRIPTION

GO Term Finder provide an object oriented set of libraries for dealing with files produced by the Gene Ontology project (GO).  In particular, the GO::TermFinder object allows a client program to provide a list of genes, from which it will determine p-values for the annotation associated with that list of genes.  It does this using the hypergeometric distribution. In addition, a corrected p_value is calculated, to correct for multiple hypothesis testing.  This distribution also contains a version of Shuai Weng’s GO::View module (and associated classes), such that you can graphically display the output of the GO::TermFinder.

::DEVELOPER

Gavin Sherlock etc.

:: SCREENSHOTS

:: REQUIREMENTS

• Linux / Windows with cygwin / Max OS X
• Perl
• GCC

:: DOWNLOAD

GO Term Finder

:: MORE INFORMATION

Citation

.Boyle, E.I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J.M. and Sherlock, G. (2004)
GO::TermFinder – open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
Bioinformatics, 20, 3710-3715.