Tag: Zinc binding

GRE4Zn – Geometric REstriction for Zinc-binding

GRE4Zn

:: DESCRIPTION

GRE4Zn is a novel computational program to characterize the zinc-binding sites in protein structures, by restricting the distances between zinc and its coordinating atoms.

::DEVELOPER

Haiyan Liu Group

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):171-80. doi: 10.1016/j.bbapap.2013.03.001. Epub 2013 Mar 14.
Computationally characterizing and comprehensive analysis of zinc-binding sites in proteins.
Liu Z1, Wang Y, Zhou C, Xue Y, Zhao W, Liu H.

HUF-ZINC – HMM-based U-shape Motif Finder for Zinc Binding

HUF-ZINC

:: DESCRIPTION

HUF-ZINC is a HMM-based web server for prediction of the novel, as well as conventional, zinc finger motifs in protein sequences.

::DEVELOPER

Bioinformatics Institute (BII), Singapore.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

J Bioinform Comput Biol. 2013 Feb;11(1):1340008. doi: 10.1142/S0219720013400088. Epub 2013 Jan 16.
Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding (“Huf-Zinc”) motif.
Maurer-Stroh S1, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F.