Tag: Yammp

Yammp Conversion Tools – Simulation of Yammp Models in CHARMM or Amber

Yammp Conversion Tools

:: DESCRIPTION

The Yammp Conversion Tools contain a set of utilities that allow the simulation of Yammp models in CHARMM or Amber.

::DEVELOPER

NIH Research Resource Center for the Development of Multiscale Modeling Tools for Structural Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Perl

:: DOWNLOAD

Yammp Conversion Tools

:: MORE INFORMATION

Citation:

Michael Feig, John Karanicolas, Charles L. Brooks, III: MMTSB Tool Set (2001), MMTSB NIH Research Resource, The Scripps Research Institute

YUP 1.080827 / Yammp 2 – Molecular Simulation

YUP 1.080827 / Yammp 2

:: DESCRIPTION

YUP (Yammp Under Python), also known as Yammp 2, is a molecular modeling program. Although a general purpose tool, development is currently concentrated on molecular simulations (mechanics) and on reduced representation and multiscale modeling. YUP is based on an earlier program Yammp.

::DEVELOPER

The Harvey Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

YUP

:: MORE INFORMATION

Citation:

Tan, R. K. Z., Petrov, A. S., Harvey, S. C. YUP: A Molecular Simulation Program for Coarse-Grained and Multiscaled Models. J. Chem. Theory Comput., 2006, 2(3), 529-540