Y-LineageTracker – High-throughput analysis framework for Y-chromosomal Next-generation sequencing data

Y-LineageTracker

:: DESCRIPTION

Y-LineageTracker provides a framework to fully analyze human Y-chromosome sequencing data. Y-LineageTracker supports most of analyses of Y-chromosome sequencing data and facilitates subsequent studies of NRY haplogroups and Y-STRs.

::DEVELOPER

Population Genomics Group (PGG)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

Y-LineageTracker

:: MORE INFORMATION

Citation

Chen H, Lu Y, Lu D, Xu S.
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data.
BMC Bioinformatics. 2021 Mar 9;22(1):114. doi: 10.1186/s12859-021-04057-z. PMID: 33750289; PMCID: PMC7941695.

YTool 1.0 – Retrieving Y Chromosomal Haplogroup Trees

YTool 1.0

:: DESCRIPTION

YTool is a free stand-alone software designed for extracting human Y chromosomal SNPs information from genome-wide association studies (GWAS) data in order to perform phylogenetic analyses.

::DEVELOPER

Yao Lab

:: SCREENSHOTS

::REQUIREMENTS

Windows

:: DOWNLOAD

YTool

:: MORE INFORMATION

Citation

Eur J Hum Genet. 2014 Aug;22(8):1046-50. doi: 10.1038/ejhg.2013.272. Epub 2013 Nov 27.
Retrieving Y chromosomal haplogroup trees using GWAS data.
Peng MS, He JD, Fan L, Liu J, Adeola AC, Wu SF, Murphy RW, Yao YG, Zhang YP

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