Tag: Workflow Management System

COSMOS 2.6.24 – Powerful Workflow Management System

COSMOS 2.6.24

:: DESCRIPTION

COSMOS is a Python library for workflow management that allows formal description of pipelines and partitioning of jobs. In addition, it includes a user-interface for tracking the progress of jobs, abstraction of the queuing system and fine-grained control over the workflow. Workflows can be created on traditional computing clusters as well as cloud-based services.

::DEVELOPER

the Wall Lab at Stanford University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Python

:: DOWNLOAD

  COSMOS

:: MORE INFORMATION

Citation

COSMOS: Python library for massively parallel workflows.
Gafni E, Luquette LJ, Lancaster AK, Hawkins JB, Jung JY, Souilmi Y, Wall DP, Tonellato PJ.
Bioinformatics. 2014 Jun 30. pii: btu385

OpenFreezer 201402 – Laboratory Reagent Tracking and Workflow Management System

OpenFreezer 201402

:: DESCRIPTION

OpenFreezer is an open-source information management system for biological laboratories.The system tracks information on all reagents within the laboratory, including specific properties of each reagent (i.e. sequences, external identifiers), and on all the physical preparations of these reagents (storage locations, physical characteristics).

::DEVELOPER

OpenFreezer Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX
  • Apache
  • PHP
  • MySQL
  • BioPython
  • Python
  • ReportLab
  • Overlib

:: DOWNLOAD

   OpenFreezer

:: MORE INFORMATION

Citation

Nat Methods. 2011 Jul 28;8(8):612-3. doi: 10.1038/nmeth.1658.
OpenFreezer: a reagent information management software system.
Olhovsky M, Williton K, Dai AY, Pasculescu A, Lee JP, Goudreault M, Wells CD, Park JG, Gingras AC, Linding R, Pawson T, Colwill K.