smallWig – Parallel Compression of RNA-seq WIG Files

smallWig

:: DESCRIPTION

The smallWig tool provides compression/decompression for WIG files.

::DEVELOPER

Zhiying WangTsachy (Itschak) Weissman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

  smallWig

:: MORE INFORMATION

Citation

smallWig: Parallel Compression of RNA-seq WIG Files.
Wang Z, Weissman T, Milenkovic O.
Bioinformatics. 2015 Sep 30. pii: btv561.

cnv2wiggle – Convert CNV Details to wig and generate a BED file

cnv2wiggle

:: DESCRIPTION

The cnv2wiggle perl script will create a bed track for ploidy segments different from 2 and a gwiggle plot of the relative coverae. These files can be opened in IGV. This script doesn’t include hypervariable regions

::DEVELOPER

Complete Genomics, Inc.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX
  • Perl

:: DOWNLOAD

 cnv2wiggle

:: MORE INFORMATION