Episomizer
:: DESCRIPTION
Episomizer is currently a semi-automatic computational pipeline to construct circular DNA structures through identifying SVs connecting the boundaries of highly amplified CNA segments followed by a graph theoretical algorithm that searches for cyclic graphs.
::DEVELOPER
Zhang (Jinghui Zhang) Lab,St. Jude Children’s Research Hospital
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Perl
- R
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Xu K, Ding L, Chang TC, Chiang J, Mulder H, Wang S, Shaw TI, Wen J, Hover L, McLeod C, Wang YD, Easton J, Rusch M, Dalton J, Downing JR, Ellison DW, Zhang J, Baker SJ, Wu G.
Structure and evolution of double minutes in diagnosis and relapse brain tumors.
Acta Neuropathol. 2019 Jan;137(1):123-137. doi: 10.1007/s00401-018-1912-1.