Tag: Whole-genome Bisulfite Sequencing

SwDMR 1.0.7 – Differentially Methylated Regions Identification and Annotation

SwDMR 1.0.7

:: DESCRIPTION

swDMR is a free software using a sliding-window approach to identify differentially methylated regions (DMR) from whole-genome bisulfite sequencing. It is suitable for single base resolution methylation dataset through methylC-seq, BS-seq or RRBS technology.

::DEVELOPER

Xianfeng Li (xfliwz@gmail.com), Institute of Genomic Medicine, Wenzhou Medical College, , China

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • R package
  • Perl
  • BEDTools

:: DOWNLOAD

 SwDMR

:: MORE INFORMATION

Citation

swDMR: A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing.
Wang Z, Li X, Jiang Y, Shao Q, Liu Q, Chen B, Huang D.
PLoS One. 2015 Jul 15;10(7):e0132866. doi: 10.1371/journal.pone.0132866.