GeNMR – Webserver for Protein Structure generation from NOE Distant Restraints and Chemical Shifts

GeNMR

:: DESCRIPTION

GeNMR (GEnerate NMR structure) is a web server for generating 3D protein structures using NOE-derived distance restraints and NMR chemical shifts.

::DEVELOPER

GeNMR team

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W670-7. doi: 10.1093/nar/gkp280. Epub 2009 Apr 30.
GeNMR: a web server for rapid NMR-based protein structure determination.
Berjanskii M1, Tang P, Liang J, Cruz JA, Zhou J, Zhou Y, Bassett E, MacDonell C, Lu P, Lin G, Wishart DS.

ABS-Scan – Webserver for Insilico Binding site Alanine Scanning Mutagenesis

ABS-Scan

:: DESCRIPTION

ABS-Scan performs alanaine scanning mutagenesis for a given protein-ligand complex.

::DEVELOPER

Chandra Lab, Dept. of Biochemistry.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

ABS-Scan: In silico alanine scanning mutagenesis for binding site residues in protein-ligand complex.
Anand P, Nagarajan D, Mukherjee S, Chandra N.
Version 2. F1000Res. 2014 Sep 9 [revised 2014 Dec 1];3:214. doi: 10.12688/f1000research.5165.2. eCollection 2014.

VirtualCytometry – Webserver for the Study of Immune Cell Differentiation using single-cell RNA sequencing data

VirtualCytometry

:: DESCRIPTION

VirtualCytometry is a webserver that provides computational platform for the study of immune cell differentiation using scRNA-seq data by enabling identification and validation of genes involved in immune cell differentiations via ‘Discovery Module’ and ‘Hypothesis Test Module’ respectively.

::DEVELOPER

Network Biomedicine Laboratory at Yonsei University, Korea

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Aug 2. pii: btz610. doi: 10.1093/bioinformatics/btz610.
VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data.
Kim K, Yang S, Ha SJ, Lee I.

PIP – webserver for Potential Protein-protein Interactions

PIP

:: DESCRIPTION

PIP (Potential Interactions of Proteins)is a webserver for potential protein-protein interactions of human, rat and fission yeast proteins. It contains putative interactions, which are derived from homology with experimentally known protein-protein interactions from various species.

::DEVELOPER

Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute

:: SCREENSHOTS

N/A

::REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Pall F Jonsson, Tamara Cavanna, Daniel Zicha, Paul A Bates. (2006).
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis.
BMC Bioinformatics, 7:2.

WAR – Webserver for Aligning structural RNAs

WAR

:: DESCRIPTION

WAR utilizes several tools simultaneously to align and predict the common secondary structure of multiple RNA sequences.

::DEVELOPER

Center for non-coding RNA in Technology and Health (RTH)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

WAR: Webserver for aligning structural RNAs
Elfar Torarinsson and Stinus Lindgreen
Nucleic Acids Res. 2008 July 1; 36(Web Server issue): W79–W84.