Tag: Warehouse

GenoQuery – Querying Genomic Data Warehouse

GenoQuery

:: DESCRIPTION

GenoQuery is a module for querying a relational genomic warehouse, which is based on an original multi-layer architecture of the warehouse, made of two layers, the entities layer and the databases layer.

::DEVELOPER

Christine Froidevaux

:: SCREENSHOTS

GenoQuery

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 GenoQuery

:: MORE INFORMATION

Citation

Frederic Lemoine, Bernard Labedan, Christine Froidevaux
GenoQuery: a new querying module for functional annotation in a genomic warehouse
Bioinformatics (ISMB 2008), 07, 13, i322-i329, 24, 2008

InterMine 5.0.3 – Open Source Biological Data Warehouse System

InterMine 5.0.3

:: DESCRIPTION

InterMine is an open source data warehouse built specifically for the integration and analysis of complex biological data.InterMine enables the creation of biological databases accessed by sophisticated web query tools.

::DEVELOPER

the Micklem lab at the University of Cambridge

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Web Server
  • Java
  • PostgreSQL
  • TomCat
  • Perl

:: DOWNLOAD

 InterMine

:: MORE INFORMATION

Citation

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.
Bioinformatics. 2012 Dec 1;28(23):3163-5. doi: 10.1093/bioinformatics/bts577.