Tag: Void Volume

ProteinVolume 1.3 – Calculating Molecular van der Waals and Void Volumes in Proteins

ProteinVolume 1.3

:: DESCRIPTION

ProteinVolume (PV) is a Java program that calculates the components of the solvent-excluded (geometric) volume of a protein: van der Waals and void volume.

::DEVELOPER

ProteinVolume team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • JRE

:: DOWNLOAD

 ProteinVolume

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2015 Mar 26;16(1):101. doi: 10.1186/s12859-015-0531-2.
ProteinVolume: calculating molecular van der Waals and void volumes in proteins.
Chen CR, Makhatadze GI.

AVP 1.3 – Calculate Protein Void Volumes and Packing Quality

AVP 1.3

:: DESCRIPTION

AVP (Another Void Program) is a new method for the analysis of voids in proteins and packing quality in a single united program. Traditionally been analysed using different approaches, but in reality they are extremes of the same phenomenon – imperfect packing of atoms in the inside of a protein.

::DEVELOPER

Andrew C.R. Martin’s Bioinformatics Group at UCL

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 AVP

:: MORE INFORMATION