Tag: Vitamin

TargetVita – Vitamin-specific Predictor for Targeting Protein-vitamin Binding Residues

TargetVita

:: DESCRIPTION

TargetVita is a new predictor which designed and implemented for predicting protein-vitamin binding residues using protein sequences.

::DEVELOPER

Pattern Recognition and Bioinformatics Group (Shen Group)

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Sep 5;15:297. doi: 10.1186/1471-2105-15-297.
Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.
Yu DJ1, Hu J, Yan H, Yang XB, Yang JY, Shen HB.

VitaPred – Prediction of Vitamin Interacting Residues

VitaPred

:: DESCRIPTION

VitaPred is a SVM (Support Vector Machines) based prediction method for the vitamin-interacting residues in protein sequences. Vitamins play vital role in the cell and involves in the various enzymatic reaction and functions as a cofactor. VitaPred predicts that which amino acid residues in the protein sequence will interact with the vitamins. An example of protein-vitamin binding given in the following diagram, where pyridoxal 5′-phosphate (PLP, red color) interacts with specific residues (yellow color) of a protein (cyan color).

VitaPred Online version

::DEVELOPER

VitaPred Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

  VitaPred

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013 Feb 7;14:44. doi: 10.1186/1471-2105-14-44.
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information.
Panwar B1, Gupta S, Raghava GP.