RCandy 1.0.0 – Visualising Homologous Recombinations in Bacterial Genomes

RCandy 1.0.0

:: DESCRIPTION

RCandy is an R package for visualising homologous recombination events in bacterial genomes

::DEVELOPER

Chrispin Chaguza

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R

:: DOWNLOAD

RCandy

:: MORE INFORMATION

Citation:

Chaguza C, Tonkin-Hill G, Lo SW, Hadfield J, Croucher NJ, Harris SR, Bentley SD.
RCandy: an R package for visualising homologous recombinations in bacterial genomes.
Bioinformatics. 2021 Dec 2:btab814. doi: 10.1093/bioinformatics/btab814. Epub ahead of print. PMID: 34864895.

MerlinViewer 20101207 – Visualising Merlin output data

MerlinViewer 20101207

:: DESCRIPTION

MerlinViewer visiualizes the results of high density SNP chip analysis using the Merlin application. The results are displayed as a scatter graph of the LOD, HLOD or Alpha score against chromosomal position

::DEVELOPER

Ian’s DNA@Leeds

:: SCREENSHOTS

MerlinViewer

:: REQUIREMENTS

  • Windows
  • Microsoft .NET framework version 2.0

:: DOWNLOAD

 MerlinViewer

:: MORE INFORMATION

Ensemble NMF 0.91 / NMF Tree Browser 0.98 – Clustering and Visualising Protein Interaction Networks

Ensemble NMF 0.91 / NMF Tree Browser 0.98

:: DESCRIPTION

Ensemble NMF (Non-negative Matrix Factorization ) is a software for clustering and visualising protein interaction networks.

The NMF Tree Browser tool is a cross-platform Java application for visually inspecting a soft hierarchy as produced by the Ensemble NMF algorithm.

::DEVELOPER

the Machine Learning Group (MLG)

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows /Mac OsX
  • Java / C++ Compiler

:: DOWNLOAD

 Ensemble NMF / NMF Tree Browser

:: MORE INFORMATION

Citation

Greene, D., Cagney, G., Krogan, N and Cunningham, P. (2008),
Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions“,
Bioinformatics, 24, 15: 1722–1728.