Tag: Viruse

VirusSeq – Detecting Known Viruses and their integration Sites using Next-generation Sequencing of Human Cancer Tissue

VirusSeq

:: DESCRIPTION

VirusSeq is a software for detecting known viruses and their integration sites in the human genome using next-generation sequencing data.

::DEVELOPER

Xiaoping Su

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 VirusSeq

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jan 15;29(2):266-7. doi: 10.1093/bioinformatics/bts665.
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.
Chen Y, Yao H, Thompson EJ, Tannir NM, Weinstein JN, Su X.

HoloVir 1.0 – Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

HoloVir 1.0

:: DESCRIPTION

HoloVir is a robust and flexible data analysis pipeline that provides an optimised and validated workflow for taxonomic and functional characterisation of viral metagenomes.

::DEVELOPER

CUBE – Bioinformatics and Computational Systems Biology, University of Vienna

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

HoloVir

:: MORE INFORMATION

Citation:

Front Microbiol, 7, 822 2016 Jun 9 eCollection 2016
HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts
Patrick W Laffy et al.