viRome 0.10 – Analysis of Viral small RNA Sequence datasets

viRome 0.10

:: DESCRIPTION

viRome is an R package for the visualization and analysis of viral small RNA sequence datasets

::DEVELOPER

ARK-Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package

:: DOWNLOAD

 viRome

:: MORE INFORMATION

Citation

viRome: an R package for the visualization and analysis of viral small RNA sequence datasets.
Watson M, Schnettler E, Kohl A.
Bioinformatics. 2013 Aug 1;29(15):1902-3. doi: 10.1093/bioinformatics/btt297.

VirusSeeker – Virus Discovery and Virome Composition Analysis

VirusSeeker

:: DESCRIPTION

VirusSeeker is a set of fully automated and modular software package designed for mining next generation sequencing data form Illumina platform to identify sequences of viral origin.

::DEVELOPER

The Zhao Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

VirusSeeker

:: MORE INFORMATION

Citation:

Zhao G, Wu G, Lim ES, Droit L, Krishnamurthy S, Barouch DH, Virgin HW, Wang D.
VirusSeeker, a computational pipeline for virus discovery and virome composition analysis.
Virology. 2017 Mar;503:21-30. doi: 10.1016/j.virol.2017.01.005. Epub 2017 Jan 18. PMID: 28110145; PMCID: PMC5326578.