:: DESCRIPTION
viRome is an R package for the visualization and analysis of viral small RNA sequence datasets
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
viRome: an R package for the visualization and analysis of viral small RNA sequence datasets.
Watson M, Schnettler E, Kohl A.
Bioinformatics. 2013 Aug 1;29(15):1902-3. doi: 10.1093/bioinformatics/btt297.
:: DESCRIPTION
IRESPred is a Support Vector Machine (SVM) based computational tool to predict the presence of Internal Ribosome Entry Site (IRES) in viral and cellular sequences.
::DEVELOPER
Bioinformatics Centre, Savitribai Phule Pune University (formerly University of Pune),
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES).
Kolekar P, Pataskar A, Kulkarni-Kale U, Pal J, Kulkarni A.
Sci Rep. 2016 Jun 6;6:27436. doi: 10.1038/srep27436
:: DESCRIPTION
LayerCake is a tool created for visualizing viral variation from next generation sequencing data
::DEVELOPER
collaboration between labs associated with UW Computer Sciences andUW Pathology & Laboratory Medicine Departments.
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
LayerCake: a tool for the visual comparison of viral deep sequencing data.
Correll M, Bailey AL, Sarikaya A, O’Connor DH, Gleicher M.
Bioinformatics. 2015 Jul 7. pii: btv407.
:: DESCRIPTION
SAVAGE is a computational tool for reconstructing individual haplotypes of intra-host virus strains (a viral quasispecies) without the need for a high quality reference genome.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Genome Res. 2017 May;27(5):835-848. doi: 10.1101/gr.215038.116. Epub 2017 Apr 10.
De novo assembly of viral quasispecies using overlap graphs.
Baaijens JA, Aabidine AZE, Rivals E, Schönhuth A.
:: DESCRIPTION
VOCs (Viral Orthologous Clusters) is an easy-to-use Java GUI used to access the VBRC genome databases.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Ehlers, A., J. Osborne, Slack, S., R. L. Roper, and C. Upton. 2002.
Poxvirus Orthologous Clusters (POCs). Bioinformatics 18, 1544-1545
Upton, C., Slack, S., Hunter, A.W., Ehlers, A. and R. L. Roper. 2003.
Poxvirus Orthologous Clusters (POCs): Toward defining the minimum essential poxvirus genome. J. Virology, 77, 7590-7600.