NetStart 1.0c – Translation Start in Vertebrate & A. Thaliana DNA

NetStart 1.0c

:: DESCRIPTION

NetStart produces neural network predictions of translation start in vertebrate and Arabidopsis thaliana nucleotide sequences. NetStart has been trained on cDNA-like sequences and will therefore presumably have better performance for cDNAs and ESTs. We have not tested the performance on genome data which may contain introns adjacent to the start codon.

::DEVELOPER

DTU Health Tech

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NetStart

:: MORE INFORMATION

Citation

Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.
A. G. Pedersen and H. Nielsen, ISMB: 5, 226-233, 1997.

Promoter 2.0 – Transcription Start Sites in Vertebrate DNA

Promoter 2.0

:: DESCRIPTION

Promoter predicts transcription start sites of vertebrate PolII promoters in DNA sequences. It has been developed as an evolution of simulated transcription factors that interact with sequences in promoter regions. It builds on principles that are common to neural networks and genetic algorithms.

::DEVELOPER

DTU Health Tech

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Promoter

:: MORE INFORMATION

Citation

Promoter 2.0: for the recognition of PolII promoter sequences.
Steen Knudsen
Bioinformatics 15, 356-361, 1999.

MoNetFamily – Homologous Modules and Module-module Interaction Networks in Vertebrates

MoNetFamily

:: DESCRIPTION

The MoNetFamily web server can identify the modules, homologous modules (called module family), and MMI networks across multiple species for the query protein(s).

::DEVELOPER

MoNetFamily team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W263-70. doi: 10.1093/nar/gks541. Epub 2012 Jun 11.
MoNetFamily: a web server to infer homologous modules and module-module interaction networks in vertebrates.
Lin CY1, Lin YW, Yu SW, Lo YS, Yang JM.