:: DESCRIPTION
VAGUE (Velvet Assembler Graphical Front End) is a GUI for the Velvet de novo assembler.
::DEVELOPER
Victorian Bioinformatics Consortium
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Powell DR, Seemann T.
VAGUE: a graphical user interface for the Velvet assembler.
Bioinformatics. 2013 Jan 15;29(2):264-5. doi: 10.1093/bioinformatics/bts664. Epub 2012 Nov 17. PMID: 23162059.
:: DESCRIPTION
Velvet-SC is a Velvet modified software for Single Cell reads
::DEVELOPER
UCSD Department of Computer Science and Engineering
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hamidreza Chitsaz, Joyclyn L. Yee-Greenbaum, Glenn Tesler, Mary-Jane Lombardo, Christopher L. Dupont, Jonathan H. Badger, Mark Novotny, Douglas B. Rusch, Louise J. Fraser, Niall A. Gormley, Ole Schulz-Trieglaff, Geoffrey P. Smith, Dirk J. Evers, Pavel A. Pevzner, Roger S. Lasken.
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
Nature Biotechnology, vol. 29, no. 11, pp. 915-921 (2011), advance online publication, 18 Sep 2011
:: DESCRIPTION
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454.Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired-end read and long read information, when available, to retrieve the repeated areas between contigs.
::DEVELOPER
Daniel Zerbino and Ewan Birney
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
D.R. Zerbino and E. Birney.
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Research 18:821-829.
:: DESCRIPTION
VelvetOptimiser is a multi-threaded Perl script for automatically optimising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
VelvetK can estimate the best k-mer size to use for your Velvet de novo assembly. It needs two inputs: the estimated genome size, and all your sequence read files. The genome size can be supplied as as a number (eg. 3.5M) or as a FASTA file of a closely related genome.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
