VDJSeq-Solver
:: DESCRIPTION
VDJSeq-Solver is a completely automated workflow for the in silico detection of the main clone V(D)J recombination sequence characterizing neoplastic tissues, using RNA-Seq paired-end reads.
::DEVELOPER
EDA (Electronic Design Automation Group)
:: SCREENSHOTS
N/A
::REQUIREMENTS
- Linux
- TopHat
- Java
- Perl
- BEDTools
- Bowtie
- Blast
- SHRiMP
- Samtools
:: DOWNLOAD
:: MORE INFORMATION
Citation
VDJSeq-Solver: In Silico V(D)J Recombination Detection Tool.
Paciello G, Acquaviva A, Pighi C, Ferrarini A, Macii E, Zamo’ A, Ficarra E.
PLoS One. 2015 Mar 23;10(3):e0118192. doi: 10.1371/journal.pone.0118192.