:: DESCRIPTION
MRHMMs accommodates a variety of HMMs that can be flexibly applied to many biological studies and beyond.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2014 Feb 27. [Epub ahead of print]
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.
Lee Y1, Ghosh D, Hardison RC, Zhang Y.
:: DESCRIPTION
OpenCRAVAT is a new open source, scalable decision support system to support variant and gene prioritization. It offers a dynamic GUI, allowing users to easily, download tools from an extensive resource catalog, create customized pipelines, run jobs at speeds that exceed current variant annotation API services, and explore results in a richly detailed viewing environment.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pagel KA, Kim R, Moad K, Busby B, Zheng L, Tokheim C, Ryan M, Karchin R.
Integrated Informatics Analysis of Cancer-Related Variants.
JCO Clin Cancer Inform. 2020 Mar;4:310-317. doi: 10.1200/CCI.19.00132. PMID: 32228266; PMCID: PMC7113103.
CRAVAT: cancer-related analysis of variants toolkit.
Douville C, Carter H, Kim R, Niknafs N, Diekhans M, Stenson PD, Cooper DN, Ryan M, Karchin R.
Bioinformatics. 2013 Mar 1;29(5):647-8. doi: 10.1093/bioinformatics/btt017. Epub 2013 Jan 16.
:: DESCRIPTION
CancerVar is a bioinformatics software tool for clinical interpretation of somatic variants.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Li Q, Ren Z, Zhou Y, Wang K.
CancerVar: a web server for improved evidence-based clinical interpretation of cancer somatic mutations and copy number abnormalities.
bioRxiv, 2020.
