:: DESCRIPTION
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. It is both sensitive and specific. Platypus can detect SNPs and short indels in low and high coverage data, and has been tested on whole-genome and exon-capture data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DISCOVAR is a whole genome shotgun assembler and variant caller that can generate high quality assemblies and variant calls from the latest 250 base Illumina PCR-free fragment reads.
::DEVELOPER
Computational Research and Development Group, Broad Institute of MIT and Harvard
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
glfMultiples is a GLF-based variant caller for next-generation sequencing data. It takes a set of GLF format genotype likelihood files as input and generates a VCF-format set of variant calls as output
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
cnD (Copy number variant detection) is a program to detect copy number variants from short read sequence data.
::DEVELOPER
Jared Simpson (js18@sanger.ac.uk).
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Copy number variant detection in inbred strains from short read sequence data.
Simpson JT, McIntyre RE, Adams DJ and Durbin R
Bioinformatics (Oxford, England) 2010;26;4;565-7
