starrynite II 20150713 – Accurate, Probabilistic Tracking for Single Cell analysis and understanding

starrynite II 20150713

:: DESCRIPTION

starrynite is an image analysis tool for tracking fluorescently-labeled nuclei during C. elegans embryogenesis.

::DEVELOPER

starrynite team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows

:: DOWNLOAD

:: MORE INFORMATION

Citation:

A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D,
Santella A, Du Z, Nowotschin S, Hadjantonakis AK and Bao Z
BMC Bioinformatics 2010, 11:580

StatsDB 1.1 – Storage and Understanding of Next Generation Sequencing Run Metrics

StatsDB 1.1

:: DESCRIPTION

StatsDB is an open-source software package for storage and analysis of next generation sequencing run metrics.

::DEVELOPER

the Earlham Institute.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Mac OsX
Perl
Java
MySQL

:: DOWNLOAD

:: MORE INFORMATION

Citation

F1000Research 2014, 2:248 (doi: 10.12688/f1000research.2-248.v2)
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.
Ramirez-Gonzalez RH, Leggett RM, Waite D, Thanki A, Drou N, Caccamo M, Davey R