Tag: tRNA Gene

Trnascan-SE 2.0.8 – Search for tRNA Genes in Genomic Sequence

Trnascan-SE 2.0.8

:: DESCRIPTION

tRNAscan-SE is a program for improved detection of transfer RNA genes in genomic sequence.

::DEVELOPER

the Lowe Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Trnascan-SE

:: MORE INFORMATION

Citation:

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.
Lowe TM, Chan PP.
Nucleic Acids Res. 2016 May 12. pii: gkw413.

Lowe, T.M. and Eddy, S.R. (1997)
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Research, 25, 955-964.

tRNAcc 1.0 – Identify Genomic Islands Associated with tRNA Genes

tRNAcc 1.0

:: DESCRIPTION

tRNAcc is a tool for identifying genomic islands (novel gene content) associated with tRNA genes

::DEVELOPER

Hong-Yu Ou (tjohy@hotmail.com) , Kumar Rajakumar ( kr46@le.ac.uk)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 tRNAcc

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2006 Jan 9;34(1):e3.
A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria.
Ou HY, Chen LL, Lonnen J, Chaudhuri RR, Thani AB, Smith R, Garton NJ, Hinton J, Pallen M, Barer MR, Rajakumar K.